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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1341
ChIP-seq
1001
total RNA-seq
289
ATAC-seq
180
single cell RNA-seq
162
DNase-seq
87
RNA microarray
30
pCHi-C
28
WGBS
28
snATAC-seq
20
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1341
DNA binding
Target of assay
639
histone modification
638
histone
455
transcription factor
322
broad histone mark
316
narrow histone mark
242
control
93
RNA binding protein
89
recombinant protein
32
chromatin remodeller
5
other context
5
other post-translational modification
Date released
397
November, 2017
218
October, 2019
176
August, 2017
115
May, 2019
80
April, 2019
74
October, 2018
70
November, 2018
May, 2020
48
December, 2017
40
May, 2024
34
December, 2018
25
January, 2019
18
August, 2021
15
October, 2017
13
November, 2019
8
February, 2021
6
September, 2017
3
March, 2020
1
May, 2021
Available data
1137
bam
999
bigWig
960
bed narrowPeak
730
bigBed narrowPeak
640
fastq
208
tagAlign
93
bed broadPeak
58
bigBed broadPeak
28
bed bed3+
3
tar
1
tagAlign bed3+
Organism
1334
Homo sapiens
Biosample type
857
tissue
484
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
483
liver
209
brain
145
pancreas
129
heart
79
blood vessel
79
vasculature
74
connective tissue
73
adipose tissue
66
limb
60
blood
60
bodily fluid
37
kidney
35
nerve
34
artery
29
musculature of body
20
spleen
15
epithelium
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
1337
AMP
4
T1D
Genome assembly (visualization)
917
GRCh38
909
hg19
Lab
1283
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
18
Bing Ren, UCSD
Audit category:
28
inconsistent control
27
inconsistent ontology term
Audit category:
39
missing controlled_by
Audit category:
32
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
month_released!
May, 2020
organ_slims!
ureter
BIOSAMPLE
ASSAY
1341 results
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Clear Filters
ChIP-seq
tissue
liver
95
islet of Langerhans
71
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
body of pancreas
35
+ See 103 more…
cell line
HepG2
378
GM12878
60
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
+ See 4 more…
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