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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 484ChIP-seq
  • 113total RNA-seq
  • 29ATAC-seq
  • 6MeRIP-seq
  • 6pCHi-C
  • 5STARR-seq
  • 4Hi-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2DNase-seq
  • 2HiChIP
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1MPRA
  • 1WGBS
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 484DNA binding
Target of assay
  • 361transcription factor
  • 89recombinant protein
  • 80control
  • 65RNA binding protein
  • 38histone
  • 38histone modification
  • 30chromatin remodeller
  • 19broad histone mark
  • 19narrow histone mark
  • 2other context
  • 2other post-translational modification
Date released
  • 315November, 2017
  • 60November, 2018
  • 27December, 2018
  • 23October, 2019
  • 18August, 2021
  • 18January, 2019
  • 13November, 2019
  • 8February, 2021
  • 1March, 2020
  • 1May, 2021
Available data
  • 465bam
  • 420fastq
  • 411bigWig
  • 392bed narrowPeak
  • 353bigBed narrowPeak
  • 58bed broadPeak
  • 58bigBed broadPeak
  • 20tagAlign
  • 3tar
Organism
  • 484Homo sapiens
Biosample type
  • 907tissue
  • 484cell line
  • 279primary cell
  • 198in vitro differentiated cells
  • 3stem cell
Organ
  • 378liver
  • 60blood
  • 60bodily fluid
  • 28pancreas
  • 15epithelium
  • 10kidney
  • 6artery
  • 6blood vessel
  • 6heart
  • 6vasculature
Project
  • 482AMP
  • 2T1D
Genome assembly (visualization)
  • 407hg19
  • 346GRCh38
Lab
  • 466AMP-T2D consortium
  • 18Bing Ren, UCSD
Audit category:
  • 25inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 13missing controlled_by
Audit category:
  • 26inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

484 results

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ChIP-seq
cell line
HepG2378
GM1287860
EndoC_BH115
Panc113
smooth muscle cell of the coronary artery6
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