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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1162
total RNA-seq
996
ChIP-seq
301
ATAC-seq
182
single cell RNA-seq
177
DNase-seq
87
RNA microarray
30
pCHi-C
28
snATAC-seq
27
WGBS
20
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
Assay category
996
DNA binding
Target of assay
686
histone modification
685
histone
360
narrow histone mark
324
broad histone mark
182
control
128
transcription factor
28
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
Date released
243
August, 2017
160
October, 2019
115
May, 2019
91
December, 2017
82
November, 2017
80
April, 2019
October, 2018
50
May, 2020
43
May, 2021
40
May, 2024
24
February, 2018
21
August, 2021
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
759
bam
661
bigWig
636
bed narrowPeak
322
bigBed narrowPeak
282
fastq
278
tagAlign
47
bed bed3+
35
bed broadPeak
1
tagAlign bed3+
Organism
989
Homo sapiens
Biosample type
798
tissue
484
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
209
brain
170
liver
123
heart
118
connective tissue
73
blood vessel
73
vasculature
69
pancreas
66
limb
50
adipose tissue
nerve
29
musculature of body
28
artery
27
kidney
22
embryo
22
epithelium
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
994
AMP
2
T1D
Genome assembly (visualization)
641
GRCh38
579
hg19
Lab
919
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
37
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
9
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
22
inconsistent control read length
1
inconsistent assembly
month_released!
October, 2018
organ_slims!
nerve
BIOSAMPLE
ASSAY
996 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
71
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
heart left ventricle
35
+ See 99 more…
in vitro differentiated cells
adipocyte
67
embryonic stem cell
40
neural progenitor cell
21
pancreatic endoderm
18
hepatocyte
15
+ See 8 more…
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