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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
ChIP-seq
127
total RNA-seq
17
ATAC-seq
1
DNase-seq
Assay category
146
DNA binding
Target of assay
79
histone
79
histone modification
41
narrow histone mark
37
broad histone mark
37
transcription factor
30
control
6
RNA binding protein
3
chromatin remodeller
Date released
53
August, 2017
43
December, 2017
24
February, 2018
20
August, 2021
6
May, 2021
Available data
146
bam
120
fastq
115
bigWig
110
bed narrowPeak
40
tagAlign
19
bed bed3+
14
bigBed narrowPeak
Organism
146
Homo sapiens
Biosample type
722
tissue
465
cell line
242
primary cell
146
in vitro differentiated cells
3
stem cell
Organ
53
connective tissue
22
embryo
22
epithelium
15
liver
3
pancreas
Project
146
AMP
Genome assembly (visualization)
120
GRCh38
119
hg19
Lab
146
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
organ_slims!
large intestine
BIOSAMPLE
ASSAY
146 results
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ChIP-seq
in vitro differentiated cells
adipocyte
53
neural progenitor cell
20
pancreatic endoderm
18
hepatocyte
15
definitive endodermal cell
8
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