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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ChIP-seq
151
ATAC-seq
102
single cell RNA-seq
57
total RNA-seq
31
DNase-seq
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
161
DNA binding
Target of assay
123
histone
123
histone modification
65
narrow histone mark
58
broad histone mark
29
control
10
RNA binding protein
10
transcription factor
chromatin remodeller
Date released
52
August, 2017
32
September, 2018
31
June, 2019
24
October, 2019
9
November, 2017
5
May, 2019
4
August, 2021
4
May, 2021
Available data
157
bam
129
bigWig
111
bed narrowPeak
93
fastq
56
bigBed narrowPeak
20
bed broadPeak
20
bigBed broadPeak
16
tagAlign
3
bed bed3+
Organism
161
Homo sapiens
Biosample type
865
tissue
436
cell line
161
primary cell
158
in vitro differentiated cells
stem cell
Organ
92
epithelium
70
pancreas
23
vasculature
20
blood vessel
17
vein
15
kidney
12
connective tissue
10
musculature of body
9
brain
5
heart
4
liver
3
eye
Project
161
AMP
Genome assembly (visualization)
129
hg19
122
GRCh38
Lab
161
AMP-T2D consortium
117
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
biosample_type!
stem cell
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
161 results
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ChIP-seq
primary cell
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
skeletal muscle myoblast
14
pancreatic alpha cell
13
pancreatic beta cell
13
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