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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1277
total RNA-seq
1066
ChIP-seq
449
ATAC-seq
364
single cell RNA-seq
209
DNase-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
42
pCHi-C
26
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
1066
DNA binding
Target of assay
773
histone modification
772
histone
405
narrow histone mark
367
broad histone mark
194
control
99
transcription factor
33
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
229
August, 2017
219
October, 2019
121
May, 2021
May, 2019
91
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
32
September, 2018
31
June, 2019
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
4
August, 2021
2
March, 2020
Available data
844
bam
765
bigWig
724
bed narrowPeak
338
tagAlign
337
bigBed narrowPeak
314
fastq
56
bed broadPeak
31
bed bed3+
21
bigBed broadPeak
1
tagAlign bed3+
Organism
1059
Homo sapiens
Biosample type
792
tissue
484
cell line
274
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
190
brain
185
pancreas
159
liver
107
heart
87
epithelium
86
connective tissue
73
adipose tissue
59
limb
46
vasculature
43
blood vessel
37
kidney
35
nerve
32
musculature of body
23
artery
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
980
AMP
86
T1D
Genome assembly (visualization)
701
GRCh38
679
hg19
Lab
909
AMP-T2D consortium
117
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
24
inconsistent ontology term
Audit category:
70
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
May, 2019
May, 2023
BIOSAMPLE
ASSAY
1066 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
71
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
heart left ventricle
35
+ See 94 more…
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
skeletal muscle myoblast
15
+ See 17 more…
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