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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
276
ChIP-seq
245
total RNA-seq
195
ATAC-seq
187
single cell RNA-seq
48
snATAC-seq
47
WGBS
16
pCHi-C
10
RRBS
6
Hi-C
4
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
276
DNA binding
Target of assay
234
histone
234
histone modification
121
broad histone mark
113
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
53
August, 2017
32
September, 2018
31
June, 2019
24
October, 2019
9
November, 2017
5
May, 2019
1
August, 2021
Available data
247
bigWig
242
bam
226
bed narrowPeak
100
tagAlign
94
fastq
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
bed bed3+
Organism
276
Homo sapiens
Biosample type
875
tissue
424
cell line
276
primary cell
179
in vitro differentiated cells
Organ
89
epithelium
70
pancreas
23
vasculature
20
blood vessel
17
vein
15
kidney
12
connective tissue
10
musculature of body
9
brain
5
heart
3
eye
1
liver
Project
192
AMP
84
T1D
Genome assembly (visualization)
244
hg19
204
GRCh38
Lab
159
AMP-T2D consortium
117
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bed3+
month_released!
September, 2017
organ_slims!
blood
BIOSAMPLE
ASSAY
276 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
skeletal muscle myoblast
15
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