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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
ChIP-seq
166
total RNA-seq
129
ATAC-seq
113
single cell RNA-seq
56
snATAC-seq
17
pCHi-C
10
RRBS
7
Hi-C
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
188
DNA binding
Target of assay
163
histone
163
histone modification
87
broad histone mark
76
narrow histone mark
20
control
5
RNA binding protein
5
transcription factor
Date released
121
May, 2021
31
June, 2019
22
October, 2019
5
May, 2019
4
August, 2021
3
November, 2017
2
August, 2017
Available data
189
bigWig
180
bed narrowPeak
172
bam
100
tagAlign
57
bigBed narrowPeak
24
fastq
21
bed broadPeak
bigBed broadPeak
3
bed bed3+
Organism
188
Homo sapiens
Biosample type
790
tissue
398
cell line
195
in vitro differentiated cells
188
primary cell
3
stem cell
Organ
86
epithelium
pancreas
17
vasculature
16
blood vessel
15
kidney
15
vein
12
connective tissue
10
musculature of body
5
heart
4
liver
3
brain
3
eye
Project
104
AMP
84
T1D
Genome assembly (visualization)
168
hg19
131
GRCh38
Lab
117
Kyle Gaulton, UCSD
71
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
Audit category:
1
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
files.file_type!
bigBed broadPeak
organ_slims!
pancreas
BIOSAMPLE
ASSAY
188 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
endothelial cell of umbilical vein
15
epithelial cell of proximal tubule
10
skeletal muscle satellite cell
8
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