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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
32
ChIP-seq
17
pCHi-C
10
RRBS
5
Hi-C
2
DNase-seq
1
DNAme array
Assay category
32
DNA binding
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
12
August, 2017
8
June, 2019
6
October, 2019
4
May, 2021
1
August, 2021
1
May, 2019
Available data
bigWig
242
bam
226
bed narrowPeak
100
tagAlign
94
fastq
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
3
bed bed3+
Organism
32
Homo sapiens
Biosample type
291
tissue
83
in vitro differentiated cells
73
cell line
32
primary cell
1
stem cell
Organ
22
epithelium
12
pancreas
5
blood vessel
5
vasculature
5
vein
3
connective tissue
3
kidney
2
heart
2
musculature of body
1
eye
1
liver
Project
32
AMP
Lab
32
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
files.file_type!
bigWig
lab.title!
ITG
organ_slims!
lymph node
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
endothelial cell of umbilical vein
5
cardiac fibroblast
2
epithelial cell of proximal tubule
2
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