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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
single cell RNA-seq
118
total RNA-seq
94
ChIP-seq
32
ATAC-seq
27
snATAC-seq
6
WGBS
1
DNase-seq
1
RRBS
Assay category
94
DNA binding
Target of assay
73
histone
73
histone modification
40
narrow histone mark
33
broad histone mark
16
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
53
August, 2017
32
September, 2018
9
November, 2017
Available data
247
bigWig
242
bam
226
bed narrowPeak
100
tagAlign
94
fastq
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
3
bed bed3+
Organism
94
Homo sapiens
Biosample type
420
cell line
162
tissue
120
in vitro differentiated cells
94
primary cell
3
stem cell
Organ
70
pancreas
53
epithelium
9
brain
6
vasculature
3
blood vessel
Project
94
AMP
Genome assembly (visualization)
82
hg19
77
GRCh38
Lab
94
AMP-T2D consortium
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bedgraph
month_released!
October, 2018
BIOSAMPLE
ASSAY
94 results
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ChIP-seq
primary cell
pancreatic endocrine cell
23
skeletal muscle myoblast
15
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
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