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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
166
total RNA-seq
129
ATAC-seq
113
single cell RNA-seq
56
snATAC-seq
31
DNase-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
209
DNA binding
Target of assay
179
histone
179
histone modification
95
broad histone mark
84
narrow histone mark
20
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
31
June, 2019
24
October, 2019
15
August, 2017
9
November, 2017
5
May, 2019
4
August, 2021
Available data
189
bigWig
180
bed narrowPeak
172
bam
100
tagAlign
57
bigBed narrowPeak
24
fastq
21
bed broadPeak
21
bigBed broadPeak
3
bed bed3+
Organism
209
Homo sapiens
Biosample type
789
tissue
456
cell line
209
primary cell
195
in vitro differentiated cells
3
stem cell
Organ
92
epithelium
pancreas
23
vasculature
20
blood vessel
17
vein
15
kidney
12
connective tissue
10
musculature of body
9
brain
5
heart
4
liver
3
eye
Project
125
AMP
84
T1D
Genome assembly (visualization)
189
hg19
149
GRCh38
Lab
117
Kyle Gaulton, UCSD
92
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
lab.title!
ITG
organ_slims!
lymph node
pancreas
BIOSAMPLE
ASSAY
209 results
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Clear Filters
ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
endothelial cell of umbilical vein
17
skeletal muscle myoblast
15
epithelial cell of proximal tubule
10
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