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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
187
single cell RNA-seq
147
ChIP-seq
143
total RNA-seq
48
snATAC-seq
47
WGBS
19
DNase-seq
10
Hi-C
7
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
147
DNA binding
Target of assay
113
histone
113
histone modification
60
narrow histone mark
53
broad histone mark
26
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
53
August, 2017
32
September, 2018
28
June, 2019
17
October, 2019
9
November, 2017
4
August, 2021
4
May, 2021
Available data
143
bam
118
bigWig
100
bed narrowPeak
94
fastq
51
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
16
tagAlign
3
bed bed3+
Organism
147
Homo sapiens
Biosample type
877
tissue
472
cell line
161
in vitro differentiated cells
147
primary cell
3
stem cell
Organ
92
epithelium
70
pancreas
23
vasculature
20
blood vessel
17
vein
kidney
12
connective tissue
10
musculature of body
9
brain
5
heart
4
liver
3
eye
Project
147
AMP
Genome assembly (visualization)
118
hg19
111
GRCh38
Lab
147
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
19
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
organ_slims!
kidney
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
147 results
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ChIP-seq
primary cell
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
skeletal muscle myoblast
15
pancreatic alpha cell
13
pancreatic beta cell
13
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