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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
251
ChIP-seq
243
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
22
DNase-seq
17
pCHi-C
8
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
251
DNA binding
Target of assay
218
histone
218
histone modification
113
broad histone mark
105
narrow histone mark
26
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
53
August, 2017
32
September, 2018
26
June, 2019
7
October, 2019
5
May, 2019
4
August, 2021
3
November, 2017
Available data
226
bigWig
214
bam
209
bed narrowPeak
100
tagAlign
88
fastq
40
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
3
bed bed3+
Organism
251
Homo sapiens
Biosample type
716
tissue
478
cell line
251
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
92
epithelium
70
pancreas
vasculature
20
blood vessel
17
vein
15
kidney
12
connective tissue
10
musculature of body
9
brain
heart
4
liver
3
eye
Project
167
AMP
84
T1D
Genome assembly (visualization)
226
hg19
190
GRCh38
Lab
134
AMP-T2D consortium
117
Kyle Gaulton, UCSD
Audit category:
21
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Stephen Parker, UMich
organ_slims!
heart
vasculature
BIOSAMPLE
ASSAY
251 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
skeletal muscle myoblast
15
pancreatic alpha cell
13
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