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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
41
ChIP-seq
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
41
DNA binding
Target of assay
234
histone
histone modification
121
broad histone mark
113
narrow histone mark
31
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
15
August, 2017
12
June, 2019
6
November, 2017
3
May, 2021
3
October, 2019
2
May, 2019
August, 2021
Available data
38
bam
21
fastq
17
bigWig
10
bed narrowPeak
10
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
1
tagAlign
Organism
41
Homo sapiens
Biosample type
431
cell line
268
tissue
79
in vitro differentiated cells
41
primary cell
1
stem cell
Organ
25
epithelium
12
pancreas
6
brain
6
vasculature
5
kidney
4
blood vessel
4
connective tissue
3
heart
2
eye
2
musculature of body
2
vein
Project
41
AMP
Genome assembly (visualization)
17
hg19
9
GRCh38
Lab
38
AMP-T2D consortium
3
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
month_released!
August, 2021
organ_slims!
nerve
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
CD8-positive, alpha-beta T cell
3
cardiac fibroblast
3
epithelial cell of proximal tubule
3
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