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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
total RNA-seq
225
ChIP-seq
200
ATAC-seq
139
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
9
RRBS
6
Hi-C
5
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
225
DNA binding
Target of assay
201
histone
201
histone modification
105
broad histone mark
96
narrow histone mark
20
control
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
53
August, 2017
32
September, 2018
June, 2019
7
October, 2019
5
May, 2019
4
August, 2021
3
November, 2017
Available data
206
bigWig
189
bed narrowPeak
188
bam
100
tagAlign
88
fastq
20
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
3
bed bed3+
Organism
225
Homo sapiens
Biosample type
834
tissue
478
cell line
225
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
86
epithelium
70
pancreas
vasculature
20
blood vessel
17
vein
12
kidney
9
brain
4
liver
Project
141
AMP
84
T1D
Genome assembly (visualization)
206
hg19
170
GRCh38
Lab
117
Kyle Gaulton, UCSD
108
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
July, 2018
June, 2019
organ_slims!
vasculature
BIOSAMPLE
ASSAY
225 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
skeletal muscle myoblast
15
pancreatic alpha cell
13
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