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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
245
ChIP-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
30
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
245
DNA binding
Target of assay
236
histone
236
histone modification
122
broad histone mark
114
narrow histone mark
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
118
May, 2021
40
August, 2017
32
September, 2018
21
June, 2019
21
October, 2019
6
November, 2017
4
May, 2019
3
August, 2021
Available data
238
bigWig
224
bed narrowPeak
211
bam
98
tagAlign
78
fastq
55
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
3
bed bed3+
Organism
245
Homo sapiens
Biosample type
720
tissue
404
cell line
245
primary cell
161
in vitro differentiated cells
2
stem cell
Organ
71
epithelium
58
pancreas
19
vasculature
17
blood vessel
15
vein
12
kidney
9
connective tissue
8
musculature of body
6
brain
3
heart
3
liver
eye
Project
161
AMP
84
T1D
Genome assembly (visualization)
238
hg19
205
GRCh38
Lab
131
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
20
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
eye
target.investigated_as!
control
BIOSAMPLE
ASSAY
245 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
30
pancreatic endocrine cell
23
endothelial cell of umbilical vein
15
skeletal muscle myoblast
14
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