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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
241
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
37
ChIP-seq
19
DNase-seq
17
pCHi-C
10
Hi-C
7
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
37
DNA binding
Target of assay
227
histone
histone modification
117
broad histone mark
110
narrow histone mark
29
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
15
August, 2017
10
June, 2019
6
November, 2017
3
May, 2021
2
October, 2019
1
August, 2021
Available data
34
bam
21
fastq
15
bigWig
8
bed narrowPeak
8
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
2
tagAlign
Organism
37
Homo sapiens
Biosample type
436
cell line
261
tissue
86
in vitro differentiated cells
37
primary cell
1
stem cell
Organ
26
epithelium
12
pancreas
6
brain
6
vasculature
kidney
4
blood vessel
4
connective tissue
3
heart
2
eye
2
musculature of body
2
vein
1
liver
Project
37
AMP
Genome assembly (visualization)
15
hg19
7
GRCh38
Lab
34
AMP-T2D consortium
3
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
organ_slims!
kidney
nerve
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
CD8-positive, alpha-beta T cell
3
cardiac fibroblast
3
skeletal muscle myoblast
3
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