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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 279ChIP-seq
  • 247total RNA-seq
  • 200ATAC-seq
  • 187single cell RNA-seq
  • 56snATAC-seq
  • 47WGBS
  • 31DNase-seq
  • 17pCHi-C
  • 10Hi-C
  • 10RRBS
  • 2small RNA-seq
  • 1DNAme array
  • 1FAIRE-seq
Assay category
  • 279DNA binding
Target of assay
  • 237histone
  • 237histone modification
  • 122broad histone mark
  • 115narrow histone mark
  • 32control
  • 10RNA binding protein
  • 10transcription factor
  • 1chromatin remodeller
Date released
  • 121May, 2021
  • 53August, 2017
  • 32September, 2018
  • 31June, 2019
  • 24October, 2019
  • 9November, 2017
  • 5May, 2019
  • 4August, 2021
Available data
  • 247bigWig
  • 242bam
  • 226bed narrowPeak
  • 100tagAlign
  • 94fastq
  • 57bigBed narrowPeak
  • 21bed broadPeak
  • 21bigBed broadPeak
  • 3bed bed3+
Organism
  • 279Homo sapiens
Biosample type
  • 907tissue
  • 484cell line
  • 279primary cell
  • 198in vitro differentiated cells
  • 3stem cell
Organ
  • 92epithelium
  • 70pancreas
  • 23vasculature
  • 20blood vessel
  • 17vein
  • 15kidney
  • 12connective tissue
  • 10musculature of body
  • 9brain
  • 5heart
  • 4liver
  • 3eye
Project
  • 195AMP
  • 84T1D
Genome assembly (visualization)
  • 247hg19
  • 207GRCh38
Lab
  • 162AMP-T2D consortium
  • 117Kyle Gaulton, UCSD
Audit category:
  • 25inconsistent ontology term
Audit category:
  • 44missing controlled_by
Audit category:
  • 5inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

279 results

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Clear Filters
ChIP-seq
primary cell
monocyte85
CD8-positive, alpha-beta T cell33
pancreatic endocrine cell23
endothelial cell of umbilical vein17
skeletal muscle myoblast15
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