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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1027
total RNA-seq
844
ChIP-seq
246
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
844
DNA binding
Target of assay
581
histone modification
580
histone
303
narrow histone mark
277
broad histone mark
182
control
81
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
195
October, 2019
124
August, 2017
115
May, 2019
80
April, 2019
76
November, 2017
74
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
12
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
4
September, 2017
2
March, 2020
Available data
722
bam
615
bigWig
595
bed narrowPeak
377
bigBed narrowPeak
238
tagAlign
220
fastq
bed broadPeak
bed bed3+
1
tagAlign bed3+
Organism
843
Homo sapiens
Biosample type
844
tissue
426
cell line
255
primary cell
179
in vitro differentiated cells
Organ
200
brain
152
liver
123
heart
84
pancreas
73
blood vessel
73
vasculature
69
connective tissue
68
adipose tissue
66
limb
35
nerve
28
artery
27
kidney
20
spleen
16
musculature of body
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
842
AMP
2
T1D
Genome assembly (visualization)
548
GRCh38
466
hg19
Lab
804
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
bed bed3+
bed broadPeak
organ_slims!
skeleton
BIOSAMPLE
ASSAY
844 results
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Clear Filters
ChIP-seq
tissue
liver
142
islet of Langerhans
44
left cardiac atrium
40
body of pancreas
35
heart left ventricle
35
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