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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
871
total RNA-seq
648
ChIP-seq
252
ATAC-seq
180
single cell RNA-seq
151
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
648
DNA binding
Target of assay
417
histone modification
416
histone
233
broad histone mark
183
narrow histone mark
137
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
176
August, 2017
111
October, 2019
87
May, 2019
80
April, 2019
74
October, 2018
May, 2020
48
December, 2017
40
May, 2024
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
485
bam
425
bigWig
404
bed narrowPeak
289
bigBed narrowPeak
211
fastq
70
tagAlign
28
bed bed3+
26
bed broadPeak
Organism
641
Homo sapiens
Biosample type
648
tissue
484
cell line
270
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
brain
123
heart
117
pancreas
105
liver
74
connective tissue
73
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
646
AMP
2
T1D
Genome assembly (visualization)
406
GRCh38
388
hg19
Lab
608
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3
month_released!
May, 2020
organ_slims!
brain
BIOSAMPLE
ASSAY
648 results
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ChIP-seq
tissue
liver
95
islet of Langerhans
71
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
body of pancreas
35
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