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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
872
ChIP-seq
258
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
872
DNA binding
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
185
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
195
October, 2019
150
August, 2017
115
May, 2019
80
April, 2019
76
November, 2017
74
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
12
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
722
bam
615
bigWig
595
bed narrowPeak
377
bigBed narrowPeak
238
tagAlign
220
fastq
bed broadPeak
28
bed bed3+
1
tagAlign bed3+
Organism
871
Homo sapiens
Biosample type
872
tissue
423
cell line
258
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
200
brain
155
liver
123
heart
105
pancreas
73
blood vessel
73
connective tissue
73
vasculature
72
adipose tissue
66
limb
35
nerve
28
artery
27
kidney
20
spleen
16
musculature of body
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
870
AMP
2
T1D
Genome assembly (visualization)
576
GRCh38
494
hg19
Lab
832
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
24
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
bed broadPeak
tar
organ_slims!
thymus
BIOSAMPLE
ASSAY
872 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
65
left cardiac atrium
40
body of pancreas
35
heart left ventricle
35
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