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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
905
ChIP-seq
259
ATAC-seq
178
DNase-seq
106
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
28
snATAC-seq
27
WGBS
16
Hi-C
11
RRBS
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
Assay category
905
DNA binding
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
185
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
chromatin remodeller
Date released
195
October, 2019
176
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
46
December, 2017
40
May, 2024
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
720
bam
613
bigWig
593
bed narrowPeak
375
bigBed narrowPeak
238
tagAlign
218
fastq
35
bed broadPeak
28
bed bed3+
1
tagAlign bed3+
Organism
898
Homo sapiens
Biosample type
905
tissue
454
cell line
278
primary cell
195
in vitro differentiated cells
3
stem cell
Organ
209
brain
153
liver
123
heart
117
pancreas
74
connective tissue
73
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
903
AMP
2
T1D
Genome assembly (visualization)
588
GRCh38
527
hg19
Lab
865
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
25
inconsistent control
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
905 results
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Clear Filters
ChIP-seq
tissue
liver
143
islet of Langerhans
71
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
body of pancreas
35
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