Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
754
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
754
DNA binding
Target of assay
598
histone modification
597
histone
313
narrow histone mark
284
broad histone mark
156
control
transcription factor
17
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
195
October, 2019
153
August, 2017
111
May, 2019
82
November, 2017
74
April, 2019
October, 2018
50
May, 2020
35
May, 2024
17
December, 2017
15
October, 2017
7
January, 2019
6
September, 2017
4
December, 2018
3
November, 2018
2
March, 2020
Available data
574
bam
492
bigWig
490
bed narrowPeak
282
bigBed narrowPeak
238
tagAlign
98
fastq
35
bed broadPeak
15
bed bed3+
1
tagAlign bed3+
Organism
747
Homo sapiens
Biosample type
754
tissue
269
primary cell
149
in vitro differentiated cells
123
cell line
3
stem cell
Organ
209
brain
116
liver
111
heart
70
blood vessel
70
vasculature
66
limb
59
pancreas
39
connective tissue
38
adipose tissue
35
nerve
29
musculature of body
27
artery
26
kidney
14
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
752
AMP
2
T1D
Genome assembly (visualization)
467
GRCh38
411
hg19
Lab
719
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
Audit category:
2
inconsistent ontology term
Audit category:
8
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
lab.title!
Klaus Kaestner, Upenn
month_released!
October, 2018
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
754 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
tissue
liver
108
islet of Langerhans
64
subcutaneous abdominal adipose tissue
36
left cardiac atrium
35
tibial nerve
35
+ See 99 more…
See all biosamples
Download