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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1026
total RNA-seq
850
ChIP-seq
259
ATAC-seq
179
single cell RNA-seq
146
DNase-seq
87
RNA microarray
27
snATAC-seq
26
WGBS
24
pCHi-C
15
small RNA-seq
10
Hi-C
7
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
850
DNA binding
Target of assay
603
histone modification
602
histone
315
narrow histone mark
287
broad histone mark
181
control
94
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
195
October, 2019
152
August, 2017
104
May, 2019
82
November, 2017
76
April, 2019
63
October, 2018
50
May, 2020
46
December, 2017
35
May, 2024
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
692
bam
569
bigWig
550
bed narrowPeak
351
bigBed narrowPeak
223
tagAlign
205
fastq
26
bed bed3+
22
bed broadPeak
1
tagAlign bed3+
Organism
843
Homo sapiens
Biosample type
850
tissue
369
cell line
259
primary cell
187
in vitro differentiated cells
3
stem cell
Organ
209
brain
153
liver
113
heart
109
pancreas
70
blood vessel
70
vasculature
69
connective tissue
68
adipose tissue
66
limb
35
nerve
musculature of body
27
artery
26
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
848
AMP
2
T1D
Genome assembly (visualization)
558
GRCh38
488
hg19
Lab
815
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
blood
musculature of body
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
850 results
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Clear Filters
ChIP-seq
tissue
liver
144
islet of Langerhans
69
subcutaneous abdominal adipose tissue
36
left cardiac atrium
35
tibial nerve
35
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