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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1031total RNA-seq
  • 907ChIP-seq
  • 260ATAC-seq
  • 180single cell RNA-seq
  • 178DNase-seq
  • 87RNA microarray
  • 28snATAC-seq
  • 27WGBS
  • 25pCHi-C
  • 16Hi-C
  • 16small RNA-seq
  • 11RRBS
  • 4FAIRE-seq
  • 4MeRIP-seq
  • 3snDrop-seq
Assay category
  • 907DNA binding
Target of assay
  • 628histone modification
  • 627histone
  • 324narrow histone mark
  • 303broad histone mark
  • 185control
  • 94transcription factor
  • 28RNA binding protein
  • 3other context
  • 3other post-translational modification
  • 2chromatin remodeller
Date released
  • 195October, 2019
  • 176August, 2017
  • 115May, 2019
  • 82November, 2017
  • 80April, 2019
  • 74October, 2018
  • 50May, 2020
  • 48December, 2017
  • 40May, 2024
  • 15October, 2017
  • 10November, 2018
  • 7December, 2018
  • 7January, 2019
  • 6September, 2017
  • 2March, 2020
Available data
  • 722bam
  • 615bigWig
  • 595bed narrowPeak
  • 377bigBed narrowPeak
  • 238tagAlign
  • 220fastq
  • 35bed broadPeak
  • 28bed bed3+
  • 1tagAlign bed3+
Organism
  • 900Homo sapiens
Biosample type
  • 907tissue
  • 484cell line
  • 279primary cell
  • 198in vitro differentiated cells
  • 3stem cell
Organ
  • 209brain
  • 155liver
  • 123heart
  • 117pancreas
  • 74connective tissue
  • 73adipose tissue
  • 73blood vessel
  • 73vasculature
  • 66limb
  • 35nerve
  • 29musculature of body
  • 28artery
  • 27kidney
  • 20spleen
  • 4gonad
  • 4ovary
  • 2eye
  • 1lymph node
  • 1pituitary gland
Project
  • 905AMP
  • 2T1D
Genome assembly (visualization)
  • 590GRCh38
  • 529hg19
Lab
  • 867AMP-T2D consortium
  • 40Patrick T. Ellinor, Broad
Audit category:
  • 27inconsistent control
  • 2inconsistent ontology term
Audit category:
  • 26missing controlled_by
Audit category:
  • 6inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

907 results

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Clear Filters
ChIP-seq
tissue
liver145
islet of Langerhans71
left cardiac atrium40
subcutaneous abdominal adipose tissue36
body of pancreas35
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