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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 356ATAC-seq
  • 293ChIP-seq
  • 263single cell RNA-seq
  • 245total RNA-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 57WGBS
  • 56pCHi-C
  • 34Hi-C
  • 21RRBS
  • 10MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3DNase-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 293DNA binding
Target of assay
  • 232histone
  • 232histone modification
  • 123broad histone mark
  • 109narrow histone mark
  • 32control
  • 29transcription factor
  • 11RNA binding protein
Date released
  • 115August, 2017
  • 74May, 2021
  • 40May, 2024
  • 23October, 2019
  • 19August, 2021
  • 14November, 2017
  • 7October, 2017
  • 1April, 2019
Available data
  • bam
  • 1390bigWig
  • 1325bed narrowPeak
  • 857fastq
  • 801bigBed narrowPeak
  • 398tagAlign
  • 114bed broadPeak
  • 79bigBed broadPeak
  • 53bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 293Homo sapiens
Biosample type
  • 185tissue
  • 52in vitro differentiated cells
  • 37primary cell
  • 19cell line
Organ
  • 51connective tissue
  • 42liver
  • 41heart
  • 36adipose tissue
  • 22brain
  • 22musculature of body
  • 20pancreas
  • 4gonad
  • 4ovary
  • 2eye
  • 1limb
  • 1lymph node
Project
  • 293AMP
Genome assembly (visualization)
  • 71hg19
  • 42GRCh38
Lab
  • 165AMP-T2D consortium
  • 70Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 18Bing Ren, UCSD
Audit category:
  • 1missing controlled_by
files.file_type!
  • bam
BIOSAMPLE
ASSAY

293 results

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Clear Filters
ChIP-seq
tissue
islet of Langerhans41
left cardiac atrium40
subcutaneous abdominal adipose tissue36
liver23
skeletal muscle tissue22
in vitro differentiated cells
embryonic stem cell37
adipocyte14
neural progenitor cell1
primary cell
CD8-positive, alpha-beta T cell33
naive thymus-derived CD4-positive, alpha-beta T cell2
monocyte1
neutrophil1
cell line
HepG219
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