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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
488
ChIP-seq
184
total RNA-seq
23
ATAC-seq
5
WGBS
3
Hi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
488
DNA binding
Target of assay
336
transcription factor
107
control
100
histone modification
99
histone
82
recombinant protein
58
RNA binding protein
narrow histone mark
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
308
November, 2017
56
December, 2017
49
November, 2018
32
August, 2017
23
May, 2020
17
August, 2021
3
October, 2019
Available data
460
bam
433
fastq
380
bigWig
362
bed narrowPeak
338
bigBed narrowPeak
52
bed broadPeak
52
bigBed broadPeak
46
tagAlign
bed bed3+
3
tar
Organism
488
Homo sapiens
Biosample type
369
cell line
108
tissue
10
in vitro differentiated cells
1
primary cell
Organ
488
liver
130
pancreas
109
connective tissue
101
brain
94
heart
79
epithelium
76
vasculature
74
blood vessel
59
blood
59
bodily fluid
57
adipose tissue
51
limb
37
kidney
28
artery
27
nerve
26
musculature of body
18
spleen
12
embryo
11
vein
2
eye
Project
488
AMP
Genome assembly (visualization)
373
hg19
315
GRCh38
Lab
472
AMP-T2D consortium
16
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bed3+
month_released!
December, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
488 results
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Clear Filters
ChIP-seq
cell line
HepG2
369
tissue
liver
100
right lobe of liver
8
in vitro differentiated cells
hepatocyte
10
primary cell
hepatocyte
1
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