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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
371
total RNA-seq
165
ChIP-seq
136
ATAC-seq
80
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
pCHi-C
Assay category
165
DNA binding
Target of assay
107
histone
107
histone modification
54
narrow histone mark
53
broad histone mark
48
control
19
transcription factor
RNA binding protein
Date released
80
August, 2017
45
October, 2018
September, 2018
13
October, 2019
12
November, 2019
6
September, 2017
4
May, 2021
3
March, 2020
2
May, 2019
Available data
157
bam
120
bigWig
107
fastq
100
bed narrowPeak
53
bigBed narrowPeak
19
bed bed3+
19
tagAlign
bed broadPeak
Organism
164
Homo sapiens
Biosample type
97
tissue
38
primary cell
27
cell line
3
in vitro differentiated cells
Organ
440
liver
203
brain
165
pancreas
142
connective tissue
123
heart
96
epithelium
93
vasculature
92
blood vessel
67
adipose tissue
66
limb
50
blood
50
bodily fluid
49
kidney
35
nerve
33
artery
26
musculature of body
22
embryo
20
spleen
15
vein
4
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
161
AMP
4
T1D
Genome assembly (visualization)
110
GRCh38
110
hg19
Lab
165
AMP-T2D consortium
Audit category:
14
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
9
inconsistent control read length
files.file_type!
bed broadPeak
month_released!
September, 2018
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
165 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
42
body of pancreas
30
endocrine pancreas
16
pancreas
9
primary cell
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
cell line
EndoC_BH1
14
Panc1
13
in vitro differentiated cells
pancreatic PP cell
3
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