Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1527total RNA-seq
  • 546ChIP-seq
  • 369single cell RNA-seq
  • 253ATAC-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3DNase-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 546DNA binding
Target of assay
  • 335control
  • 166histone
  • 166histone modification
  • 85narrow histone mark
  • 81broad histone mark
  • 45transcription factor
  • 9RNA binding protein
  • 1recombinant protein
Date released
  • 164August, 2017
  • 93November, 2017
  • 68October, 2019
  • 45May, 2021
  • 29October, 2018
  • 23May, 2019
  • 23May, 2020
  • 22December, 2017
  • 15April, 2019
  • 13August, 2021
  • 9October, 2017
  • 8February, 2018
  • 8June, 2019
  • 7November, 2018
  • 6September, 2017
  • 4December, 2018
  • 4January, 2019
  • 3February, 2021
  • 2November, 2019
Available data
  • 1578bam
  • 1390bigWig
  • bed narrowPeak
  • 857fastq
  • 801bigBed narrowPeak
  • 398tagAlign
  • 114bed broadPeak
  • 79bigBed broadPeak
  • 53bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 545Homo sapiens
Biosample type
  • 312tissue
  • 92cell line
  • 88in vitro differentiated cells
  • 53primary cell
  • 1stem cell
Organ
  • 139liver
  • 95connective tissue
  • 78pancreas
  • 66adipose tissue
  • 48brain
  • 32epithelium
  • 27vasculature
  • 26blood vessel
  • 20heart
  • 18limb
  • 13kidney
  • 12musculature of body
  • 11nerve
  • 9artery
  • 8embryo
  • 8spleen
  • 7vein
  • 6blood
  • 6bodily fluid
  • 4gonad
  • 4ovary
  • 3eye
  • 1lymph node
Project
  • 546AMP
Genome assembly (visualization)
  • 77hg19
  • 49GRCh38
Lab
  • 502AMP-T2D consortium
  • 40Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
Audit category:
  • 12inconsistent ontology term
Audit category:
  • 41missing controlled_by
Audit category:
  • 2inconsistent control read length
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

546 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
tissue
liver63
islet of Langerhans51
subcutaneous abdominal adipose tissue35
white adipose tissue12
tibial nerve11
cell line
HepG271
Panc17
GM128786
EndoC_BH12
smooth muscle cell of the coronary artery2
in vitro differentiated cells
embryonic stem cell38
adipocyte25
neural progenitor cell8
pancreatic endoderm6
Hepatic endoderm2
primary cell
pancreatic endocrine cell12
endothelial cell of umbilical vein7
pancreatic alpha cell6
pancreatic beta cell6
CD8-positive, alpha-beta T cell3
stem cell
hESC1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego