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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
200
ChIP-seq
187
ATAC-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
5
Hi-C
5
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
200
DNA binding
Target of assay
172
histone
172
histone modification
95
broad histone mark
77
narrow histone mark
28
transcription factor
control
11
RNA binding protein
Date released
146
May, 2021
40
May, 2024
14
August, 2021
Available data
168
bed narrowPeak
168
bigWig
84
bam
84
tagAlign
Organism
200
Homo sapiens
Biosample type
114
primary cell
40
tissue
32
in vitro differentiated cells
14
cell line
Organ
40
heart
14
liver
Project
116
AMP
84
T1D
Genome assembly (visualization)
128
hg19
124
GRCh38
Lab
AMP-T2D consortium
146
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
14
Bing Ren, UCSD
files.file_type!
bigBed bedMethyl
lab.title!
AMP-T2D consortium
month_released!
October, 2017
October, 2022
target.investigated_as!
control
BIOSAMPLE
ASSAY
200 results
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Clear Filters
ChIP-seq
primary cell
monocyte
84
CD8-positive, alpha-beta T cell
30
tissue
left cardiac atrium
40
in vitro differentiated cells
embryonic stem cell
32
cell line
HepG2
14
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