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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
135
ChIP-seq
21
ATAC-seq
6
WGBS
5
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
135
DNA binding
Target of assay
69
histone
69
histone modification
40
broad histone mark
34
transcription factor
32
control
28
narrow histone mark
4
RNA binding protein
2
chromatin remodeller
Date released
116
August, 2017
18
October, 2018
June, 2019
1
October, 2019
Available data
90
bam
90
fastq
66
bigWig
49
bed narrowPeak
22
tagAlign
11
bed bed3+
bigBed narrowPeak
1
bed broadPeak
Organism
135
Homo sapiens
Biosample type
68
tissue
67
in vitro differentiated cells
Organ
200
liver
159
pancreas
135
connective tissue
124
brain
91
epithelium
68
heart
67
adipose tissue
31
vasculature
30
blood vessel
27
kidney
23
musculature of body
22
embryo
18
limb
13
artery
11
nerve
8
spleen
7
vein
6
blood
6
bodily fluid
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
135
AMP
Genome assembly (visualization)
61
hg19
60
GRCh38
Lab
135
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
bigBed narrowPeak
month_released!
June, 2019
BIOSAMPLE
ASSAY
135 results
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ChIP-seq
tissue
subcutaneous abdominal adipose tissue
36
white adipose tissue
12
subcutaneous adipose tissue
10
omental fat pad
8
adipose tissue
1
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in vitro differentiated cells
adipocyte
67
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