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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1527total RNA-seq
  • 1070ChIP-seq
  • 504ATAC-seq
  • 369single cell RNA-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3DNase-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1070DNA binding
Target of assay
  • 626histone modification
  • 625histone
  • 365narrow histone mark
  • 335control
  • 259broad histone mark
  • 109transcription factor
  • 21RNA binding protein
  • 8recombinant protein
  • 2chromatin remodeller
Date released
  • 264August, 2017
  • 184October, 2019
  • 165May, 2021
  • 94November, 2017
  • 50May, 2020
  • 44December, 2017
  • 43August, 2021
  • 40May, 2024
  • 32September, 2018
  • 29October, 2018
  • 24February, 2018
  • 23May, 2019
  • 16April, 2019
  • 13November, 2019
  • 9October, 2017
  • 8February, 2021
  • 8June, 2019
  • 7November, 2018
  • 6September, 2017
  • 4December, 2018
  • 4January, 2019
  • 3March, 2020
Available data
  • 1578bam
  • 1390bigWig
  • 1325bed narrowPeak
  • 857fastq
  • bigBed narrowPeak
  • 398tagAlign
  • 114bed broadPeak
  • 79bigBed broadPeak
  • 53bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 1069Homo sapiens
Biosample type
  • 530tissue
  • 222primary cell
  • 184in vitro differentiated cells
  • 131cell line
  • 3stem cell
Organ
  • 200liver
  • 159pancreas
  • 138connective tissue
  • 124brain
  • 93epithelium
  • 70heart
  • 67adipose tissue
  • 31vasculature
  • 30blood vessel
  • 28kidney
  • 25musculature of body
  • 22embryo
  • 18limb
  • 13artery
  • 11nerve
  • 8spleen
  • 7vein
  • 6blood
  • 6bodily fluid
  • 4gonad
  • 4ovary
  • 3eye
  • 1lymph node
  • 1pituitary gland
Project
  • 982AMP
  • 88T1D
Genome assembly (visualization)
  • 560hg19
  • 499GRCh38
Lab
  • 858AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 18Bing Ren, UCSD
Audit category:
  • 39inconsistent ontology term
Audit category:
  • 74missing controlled_by
Audit category:
  • 25inconsistent control read length
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

1070 results

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Clear Filters
ChIP-seq
tissue
liver107
islet of Langerhans71
left cardiac atrium40
subcutaneous abdominal adipose tissue36
skeletal muscle tissue22
primary cell
monocyte85
CD8-positive, alpha-beta T cell33
pancreatic endocrine cell23
pancreatic alpha cell13
pancreatic beta cell13
in vitro differentiated cells
adipocyte67
embryonic stem cell40
neural progenitor cell21
pancreatic endoderm18
definitive endodermal cell8
cell line
HepG285
EndoC_BH115
Panc17
GM128786
smooth muscle cell of the coronary artery6
stem cell
hESC3
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