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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 481ChIP-seq
  • 395ATAC-seq
  • 263single cell RNA-seq
  • 249total RNA-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 58WGBS
  • 57pCHi-C
  • 29Hi-C
  • 21RRBS
  • 10MeRIP-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3DNase-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 481DNA binding
Target of assay
  • 315control
  • 148histone
  • 148histone modification
  • 74broad histone mark
  • 74narrow histone mark
  • 18transcription factor
  • 8RNA binding protein
  • 1recombinant protein
Date released
  • 125August, 2017
  • 72November, 2017
  • 66October, 2019
  • 42May, 2021
  • 29October, 2018
  • 23May, 2019
  • 23May, 2020
  • 22December, 2017
  • 15April, 2019
  • 13August, 2021
  • 9October, 2017
  • 8February, 2018
  • 8June, 2019
  • 7November, 2018
  • 6September, 2017
  • 4December, 2018
  • 4January, 2019
  • 3February, 2021
  • 2November, 2019
Available data
  • 1578bam
  • bigWig
  • 1325bed narrowPeak
  • 857fastq
  • 801bigBed narrowPeak
  • 398tagAlign
  • 114bed broadPeak
  • 79bigBed broadPeak
  • 53bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 480Homo sapiens
Biosample type
  • 292tissue
  • 83in vitro differentiated cells
  • 73cell line
  • 32primary cell
  • 1stem cell
Organ
  • 120liver
  • 78connective tissue
  • 57pancreas
  • 54adipose tissue
  • 46brain
  • 28epithelium
  • 23blood vessel
  • 23vasculature
  • 20heart
  • 18limb
  • 13kidney
  • 12musculature of body
  • 11nerve
  • 9artery
  • 8embryo
  • 8spleen
  • 6blood
  • 6bodily fluid
  • 5vein
  • 4gonad
  • 4ovary
  • 3eye
  • 1lymph node
Project
  • 481AMP
Genome assembly (visualization)
  • 12GRCh38
  • 11hg19
Lab
  • 440AMP-T2D consortium
  • 37Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
Audit category:
  • 12inconsistent ontology term
Audit category:
  • 3missing controlled_by
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

481 results

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Clear Filters
ChIP-seq
tissue
liver63
islet of Langerhans42
subcutaneous abdominal adipose tissue35
tibial nerve11
subcutaneous adipose tissue10
in vitro differentiated cells
embryonic stem cell38
adipocyte20
neural progenitor cell8
pancreatic endoderm6
Hepatic endoderm2
cell line
HepG252
Panc17
GM128786
EndoC_BH12
smooth muscle cell of the coronary artery2
primary cell
pancreatic alpha cell6
pancreatic beta cell6
endothelial cell of umbilical vein5
cardiac fibroblast2
epithelial cell of proximal tubule2
stem cell
hESC1
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