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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
458
total RNA-seq
88
ChIP-seq
82
DNase-seq
79
ATAC-seq
64
single cell RNA-seq
6
snATAC-seq
4
RRBS
4
small RNA-seq
3
RNA microarray
3
WGBS
3
pCHi-C
3
snDrop-seq
2
STARR-seq
1
FAIRE-seq
1
Hi-C
Assay category
88
DNA binding
Target of assay
61
histone
61
histone modification
35
broad histone mark
26
narrow histone mark
17
control
10
transcription factor
7
recombinant protein
3
RNA binding protein
Date released
36
August, 2017
23
April, 2019
21
October, 2019
5
May, 2019
3
June, 2019
Available data
89
bam
58
bigWig
46
bed narrowPeak
fastq
30
bigBed narrowPeak
8
tagAlign
4
bed bed3+
1
bed broadPeak
Organism
88
Homo sapiens
Biosample type
63
tissue
15
primary cell
10
cell line
Organ
200
brain
134
heart
100
liver
96
blood vessel
96
vasculature
71
pancreas
66
limb
63
connective tissue
57
epithelium
52
kidney
39
musculature of body
36
adipose tissue
35
nerve
34
artery
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
88
AMP
Genome assembly (visualization)
40
hg19
39
GRCh38
Lab
88
AMP-T2D consortium
Audit category:
16
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
88 results
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Clear Filters
ChIP-seq
tissue
subcutaneous abdominal adipose tissue
36
kidney
27
primary cell
epithelial cell of proximal tubule
10
kidney epithelial cell
5
cell line
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
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