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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1290total RNA-seq
  • 1014ChIP-seq
  • 470ATAC-seq
  • 235single cell RNA-seq
  • 200DNase-seq
  • 87RNA microarray
  • 58WGBS
  • 57snATAC-seq
  • 56pCHi-C
  • 33Hi-C
  • 18small RNA-seq
  • 17RRBS
  • 10MeRIP-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3FAIRE-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1014DNA binding
Target of assay
  • 787histone
  • 787histone modification
  • 404narrow histone mark
  • 383broad histone mark
  • 167control
  • 60transcription factor
  • 25RNA binding protein
  • 7recombinant protein
Date released
  • 242October, 2019
  • 165May, 2021
  • 120May, 2019
  • 115August, 2017
  • 82November, 2017
  • 80April, 2019
  • 50May, 2020
  • 43August, 2021
  • 40May, 2024
  • 31June, 2019
  • 16October, 2018
  • 13November, 2019
  • 8February, 2021
  • 6October, 2017
  • 3March, 2020
Available data
  • 1578bam
  • 1390bigWig
  • 1325bed narrowPeak
  • fastq
  • 801bigBed narrowPeak
  • 398tagAlign
  • 114bed broadPeak
  • 79bigBed broadPeak
  • 53bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 1014Homo sapiens
Biosample type
  • 687tissue
  • 185primary cell
  • 78in vitro differentiated cells
  • 64cell line
Organ
  • 200brain
  • 134heart
  • 100liver
  • 96blood vessel
  • 96vasculature
  • 71pancreas
  • 66limb
  • 63connective tissue
  • 57epithelium
  • 52kidney
  • 39musculature of body
  • 36adipose tissue
  • 35nerve
  • 34artery
  • 17vein
  • 5eye
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 926AMP
  • 88T1D
Genome assembly (visualization)
  • 614GRCh38
  • 601hg19
Lab
  • 802AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 18Bing Ren, UCSD
Audit category:
  • 55inconsistent ontology term
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

1014 results

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Clear Filters
ChIP-seq
tissue
liver78
islet of Langerhans43
left cardiac atrium40
subcutaneous abdominal adipose tissue36
heart left ventricle35
primary cell
monocyte85
CD8-positive, alpha-beta T cell33
endothelial cell of umbilical vein17
epithelial cell of proximal tubule10
skeletal muscle satellite cell8
in vitro differentiated cells
embryonic stem cell37
neural progenitor cell21
adipocyte14
cardiomyocytes3
pancreatic PP cell3
cell line
HepG218
EndoC_BH115
Panc113
smooth muscle cell of the coronary artery6
RCC 7860 HIF1a re-expression4
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