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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
153
ChIP-seq
25
ATAC-seq
9
DNase-seq
6
WGBS
5
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
153
DNA binding
Target of assay
78
histone
78
histone modification
44
broad histone mark
40
transcription factor
35
control
33
narrow histone mark
10
RNA binding protein
2
chromatin remodeller
Date released
117
August, 2017
23
October, 2018
12
June, 2019
1
October, 2019
Available data
102
bam
90
fastq
75
bigWig
58
bed narrowPeak
22
tagAlign
15
bigBed narrowPeak
11
bed bed3+
1
bed broadPeak
Organism
153
Homo sapiens
Biosample type
74
tissue
67
in vitro differentiated cells
12
primary cell
Organ
552
liver
218
pancreas
217
brain
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
153
AMP
Genome assembly (visualization)
76
hg19
75
GRCh38
Lab
153
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
hic
tagAlign bed3+
organ_slims!
skin of body
BIOSAMPLE
ASSAY
153 results
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ChIP-seq
tissue
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
adipose tissue
2
+ See 1 more…
in vitro differentiated cells
adipocyte
67
primary cell
mesenchymal stem cell
7
cardiac fibroblast
5
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