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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
609
ChIP-seq
189
total RNA-seq
24
ATAC-seq
8
snATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
609
DNA binding
Target of assay
386
transcription factor
114
control
104
histone modification
103
histone
82
recombinant protein
67
RNA binding protein
61
narrow histone mark
42
broad histone mark
33
chromatin remodeller
2
other context
2
other post-translational modification
Date released
312
November, 2017
64
November, 2018
63
December, 2017
50
May, 2020
48
August, 2017
27
December, 2018
22
August, 2021
18
January, 2019
5
October, 2019
Available data
570
bam
512
fastq
486
bigWig
467
bed narrowPeak
406
bigBed narrowPeak
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
6
bed bed3+
tar
Organism
609
Homo sapiens
Biosample type
435
cell line
155
tissue
15
in vitro differentiated cells
4
primary cell
Organ
549
liver
218
brain
218
pancreas
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
609
AMP
Genome assembly (visualization)
480
hg19
414
GRCh38
Lab
591
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
28
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tar
organ_slims!
vein
BIOSAMPLE
ASSAY
609 results
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Clear Filters
ChIP-seq
cell line
HepG2
375
GM12878
60
tissue
liver
145
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
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