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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
ChIP-seq
102
total RNA-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
184
DNA binding
Target of assay
106
histone modification
105
histone
55
narrow histone mark
49
broad histone mark
47
transcription factor
31
control
8
RNA binding protein
3
chromatin remodeller
Date released
392
November, 2017
219
October, 2019
181
August, 2017
120
May, 2019
94
December, 2017
91
May, 2021
79
April, 2019
74
October, 2018
70
November, 2018
50
May, 2020
34
December, 2018
32
September, 2018
31
June, 2019
25
January, 2019
24
August, 2021
24
February, 2018
November, 2019
8
February, 2021
8
October, 2017
6
September, 2017
3
March, 2020
Available data
184
bam
181
fastq
174
bigWig
135
bed narrowPeak
85
tagAlign
39
bed broadPeak
33
bed bed3+
32
bigBed narrowPeak
13
bigBed broadPeak
Organism
177
Homo sapiens
Biosample type
77
tissue
53
in vitro differentiated cells
53
primary cell
1
cell line
Organ
77
pancreas
67
connective tissue
27
epithelium
25
liver
14
adipose tissue
Project
181
AMP
3
T1D
Genome assembly (visualization)
156
hg19
154
GRCh38
Lab
184
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
November, 2019
BIOSAMPLE
ASSAY
184 results
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Clear Filters
ChIP-seq
tissue
liver
25
islet of Langerhans
24
pancreas
14
white adipose tissue
12
adipose tissue
2
in vitro differentiated cells
adipocyte
53
primary cell
skeletal muscle myoblast
15
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
cell line
EndoC_BH1
1
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