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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
193
DNA binding
Target of assay
166
histone
166
histone modification
105
narrow histone mark
61
broad histone mark
27
control
RNA binding protein
3
transcription factor
Date released
82
October, 2019
75
November, 2017
28
May, 2019
8
October, 2017
Available data
193
bam
169
bigWig
167
bed narrowPeak
118
tagAlign
91
bigBed narrowPeak
15
fastq
12
bed broadPeak
3
bigBed broadPeak
1
tagAlign bed3+
Organism
193
Homo sapiens
Biosample type
187
tissue
6
primary cell
Organ
453
liver
193
brain
189
pancreas
121
epithelium
97
vasculature
95
blood vessel
92
connective tissue
87
heart
65
limb
blood
50
bodily fluid
49
kidney
35
nerve
33
artery
32
adipose tissue
22
embryo
20
spleen
17
musculature of body
17
vein
2
eye
1
pituitary gland
Project
193
AMP
Genome assembly (visualization)
166
GRCh38
117
hg19
Lab
193
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
organ_slims!
blood
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
193 results
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ChIP-seq
tissue
layer of hippocampus
20
angular gyrus
15
temporal lobe
15
caudate nucleus
14
substantia nigra
14
+ See 61 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
See all biosamples
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