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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1578ChIP-seq
  • 1282total RNA-seq
  • 209DNase-seq
  • 175ATAC-seq
  • 106single cell RNA-seq
  • 18WGBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1578DNA binding
Target of assay
  • 785histone modification
  • 784histone
  • 485transcription factor
  • 405narrow histone mark
  • 378broad histone mark
  • 303control
  • 103RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 392November, 2017
  • 219October, 2019
  • 181August, 2017
  • 120May, 2019
  • 94December, 2017
  • 91May, 2021
  • 79April, 2019
  • 74October, 2018
  • 70November, 2018
  • 50May, 2020
  • 34December, 2018
  • 32September, 2018
  • 31June, 2019
  • 25January, 2019
  • 24August, 2021
  • 24February, 2018
  • 13November, 2019
  • 8February, 2021
  • 8October, 2017
  • 6September, 2017
  • 3March, 2020
Available data
  • 1578bam
  • 1390bigWig
  • 1325bed narrowPeak
  • 857fastq
  • 801bigBed narrowPeak
  • 398tagAlign
  • 114bed broadPeak
  • 79bigBed broadPeak
  • 53bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 1571Homo sapiens
Biosample type
  • 722tissue
  • 465cell line
  • 242primary cell
  • 146in vitro differentiated cells
  • 3stem cell
Organ
  • 510liver
  • 198pancreas
  • 196brain
  • 129epithelium
  • 102connective tissue
  • 102vasculature
  • 99blood vessel
  • 93heart
  • 65limb
  • 60blood
  • 60bodily fluid
  • 52kidney
  • 37adipose tissue
  • 35nerve
  • 34artery
  • 22embryo
  • 20spleen
  • 17musculature of body
  • 17vein
  • 3eye
  • 1pituitary gland
Project
  • 1490AMP
  • 88T1D
Genome assembly (visualization)
  • 1234hg19
  • 1224GRCh38
Lab
  • 1494AMP-T2D consortium
  • 84Kyle Gaulton, UCSD
Audit category:
  • 59inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 88missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
BIOSAMPLE
ASSAY

1578 results

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Clear Filters
ChIP-seq
tissue
liver122
body of pancreas35
tibial nerve35
heart left ventricle34
islet of Langerhans30
cell line
HepG2359
GM1287860
EndoC_BH115
Panc113
smooth muscle cell of the coronary artery6
primary cell
monocyte84
pancreatic endocrine cell23
endothelial cell of umbilical vein17
skeletal muscle myoblast15
pancreatic alpha cell13
in vitro differentiated cells
adipocyte53
neural progenitor cell20
pancreatic endoderm18
hepatocyte15
definitive endodermal cell8
stem cell
hESC3
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