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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
DNase-seq
45
ChIP-seq
4
ATAC-seq
4
Hi-C
2
Capture-C
2
total RNA-seq
1
pCHi-C
1
snATAC-seq
Assay category
45
DNA binding
Target of assay
22
histone
22
histone modification
17
transcription factor
11
broad histone mark
11
narrow histone mark
8
control
RNA binding protein
Date released
28
August, 2017
15
December, 2017
2
September, 2017
Available data
1022
bam
908
bigWig
863
bed narrowPeak
411
bigBed narrowPeak
373
fastq
312
tagAlign
51
bed broadPeak
45
bed bed3+
16
bigBed broadPeak
1
tagAlign bed3+
Organism
45
Homo sapiens
Biosample type
23
tissue
19
in vitro differentiated cells
3
stem cell
Organ
19
pancreas
11
connective tissue
liver
4
adipose tissue
3
embryo
3
epithelium
Project
45
AMP
Genome assembly (visualization)
45
GRCh38
45
hg19
Lab
45
AMP-T2D consortium
Audit category:
13
missing controlled_by
Audit category:
10
inconsistent control read length
files.file_type!
ibed
organ_slims!
liver
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
45 results
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ChIP-seq
tissue
islet of Langerhans
19
white adipose tissue
4
in vitro differentiated cells
adipocyte
7
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
stem cell
hESC
3
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