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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
28
ChIP-seq
2
ATAC-seq
Assay category
28
DNA binding
Target of assay
transcription factor
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
August, 2017
23
November, 2017
3
October, 2017
2
October, 2019
Available data
959
bam
770
bigWig
748
bed narrowPeak
366
bigBed narrowPeak
304
tagAlign
269
fastq
28
bed broadPeak
20
bed bed3+
19
bigBed broadPeak
1
tagAlign bed3+
Organism
28
Homo sapiens
Biosample type
14
cell line
9
tissue
5
primary cell
Organ
14
liver
12
brain
4
epithelium
4
vasculature
3
blood vessel
2
vein
Project
28
AMP
Genome assembly (visualization)
28
hg19
23
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
August, 2017
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
cell line
HepG2
14
tissue
brain
3
cingulate gyrus
2
middle frontal area 46
2
caudate nucleus
1
substantia nigra
1
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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