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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 206DNase-seq
  • 114ChIP-seq
  • 2ATAC-seq
Assay category
  • 114DNA binding
Target of assay
  • 65histone
  • 65histone modification
  • 49transcription factor
  • 36broad histone mark
  • 29narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 70November, 2017
  • 39August, 2017
  • 3October, 2017
  • 2October, 2019
Available data
  • 1578bam
  • 1390bigWig
  • 1325bed narrowPeak
  • 857fastq
  • 801bigBed narrowPeak
  • 398tagAlign
  • 114bed broadPeak
  • 79bigBed broadPeak
  • 53bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 108Homo sapiens
Biosample type
  • 58cell line
  • 35tissue
  • 21primary cell
Organ
  • 58liver
  • 15brain
  • 13musculature of body
  • 12pancreas
  • 6epithelium
  • 6vasculature
  • 4blood vessel
  • 2vein
  • 1adipose tissue
  • 1connective tissue
Project
  • 114AMP
Genome assembly (visualization)
  • 114hg19
  • 76GRCh38
Lab
  • 114AMP-T2D consortium
Audit category:
  • 2missing controlled_by
Audit category:
  • 13inconsistent control read length
  • 2inconsistent assembly
BIOSAMPLE
ASSAY

114 results

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Clear Filters
ChIP-seq
cell line
HepG258
tissue
skeletal muscle tissue13
islet of Langerhans6
pancreas6
brain3
cingulate gyrus2
primary cell
skeletal muscle myoblast13
astrocyte of the cerebellum2
brain microvascular endothelial cell2
choroid plexus epithelial cell2
endothelial cell of umbilical vein2
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