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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
684
ChIP-seq
192
DNase-seq
5
ATAC-seq
4
FAIRE-seq
Assay category
684
DNA binding
Target of assay
398
transcription factor
362
histone
362
histone modification
228
broad histone mark
134
narrow histone mark
86
RNA binding protein
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
242
November, 2017
93
May, 2019
64
April, 2019
48
November, 2018
48
October, 2019
45
October, 2018
36
December, 2017
32
August, 2017
30
December, 2018
21
January, 2019
19
June, 2019
6
October, 2017
Available data
1360
bam
1201
bigWig
1140
bed narrowPeak
703
fastq
684
bigBed narrowPeak
391
tagAlign
108
bed broadPeak
73
bigBed broadPeak
50
bed bed3+
3
tar
1
tagAlign bed3+
Organism
678
Homo sapiens
Biosample type
377
tissue
272
cell line
35
primary cell
Organ
271
liver
94
brain
71
vasculature
69
blood vessel
64
heart
59
pancreas
54
blood
54
bodily fluid
48
limb
epithelium
24
kidney
24
nerve
21
artery
15
connective tissue
14
musculature of body
12
spleen
10
vein
6
adipose tissue
2
eye
Project
684
AMP
Genome assembly (visualization)
650
GRCh38
631
hg19
Lab
684
AMP-T2D consortium
Audit category:
28
inconsistent control
16
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
30
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
month_released!
January, 2021
organ_slims!
epithelium
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
684 results
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ChIP-seq
tissue
liver
38
heart left ventricle
28
body of pancreas
26
tibial nerve
24
kidney
18
+ See 27 more…
cell line
HepG2
212
GM12878
54
Panc1
6
primary cell
skeletal muscle myoblast
14
skeletal muscle satellite cell
7
mesenchymal stem cell
6
cardiac fibroblast
3
astrocyte of the cerebellum
2
+ See 2 more…
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