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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
741
ChIP-seq
190
DNase-seq
5
ATAC-seq
4
FAIRE-seq
Assay category
741
DNA binding
Target of assay
398
transcription factor
338
histone
338
histone modification
212
broad histone mark
126
narrow histone mark
86
RNA binding protein
81
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
308
November, 2017
93
May, 2019
64
April, 2019
63
November, 2018
45
October, 2018
36
December, 2017
32
August, 2017
30
December, 2018
24
October, 2019
21
January, 2019
19
June, 2019
6
October, 2017
Available data
1414
bam
1265
bigWig
1204
bed narrowPeak
785
fastq
741
bigBed narrowPeak
391
tagAlign
108
bed broadPeak
73
bigBed broadPeak
50
bed bed3+
3
tar
1
tagAlign bed3+
Organism
735
Homo sapiens
Biosample type
353
cell line
353
tissue
35
primary cell
Organ
352
liver
94
brain
71
vasculature
69
blood vessel
64
heart
59
pancreas
54
blood
54
bodily fluid
48
limb
epithelium
24
kidney
nerve
21
artery
15
connective tissue
14
musculature of body
12
spleen
10
vein
6
adipose tissue
2
eye
Project
741
AMP
Genome assembly (visualization)
707
GRCh38
685
hg19
Lab
741
AMP-T2D consortium
Audit category:
28
inconsistent control
16
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
31
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
organ_slims!
epithelium
nerve
BIOSAMPLE
ASSAY
741 results
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Clear Filters
ChIP-seq
cell line
HepG2
293
GM12878
54
Panc1
6
tissue
liver
38
heart left ventricle
28
body of pancreas
26
kidney
18
tibial artery
18
+ See 26 more…
primary cell
skeletal muscle myoblast
14
skeletal muscle satellite cell
7
mesenchymal stem cell
6
cardiac fibroblast
3
astrocyte of the cerebellum
2
+ See 2 more…
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