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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 801ChIP-seq
  • 209DNase-seq
  • 27ATAC-seq
  • 5FAIRE-seq
Assay category
  • 801DNA binding
Target of assay
  • 405transcription factor
  • 391histone
  • 391histone modification
  • 242broad histone mark
  • 149narrow histone mark
  • 93RNA binding protein
  • 81recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 312November, 2017
  • 97May, 2019
  • 64April, 2019
  • 63November, 2018
  • 58October, 2019
  • 50December, 2017
  • 45October, 2018
  • 32August, 2017
  • 30December, 2018
  • 23June, 2019
  • 21January, 2019
  • 6October, 2017
Available data
  • 1578bam
  • 1390bigWig
  • 1325bed narrowPeak
  • 857fastq
  • 801bigBed narrowPeak
  • 398tagAlign
  • 114bed broadPeak
  • 79bigBed broadPeak
  • 53bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 795Homo sapiens
Biosample type
  • 377tissue
  • 353cell line
  • 57primary cell
  • 14in vitro differentiated cells
Organ
  • 352liver
  • 94brain
  • 71vasculature
  • 69blood vessel
  • 64heart
  • 59pancreas
  • 54blood
  • 54bodily fluid
  • 48limb
  • 36epithelium
  • 24kidney
  • 24nerve
  • 21artery
  • 15connective tissue
  • 14musculature of body
  • 12spleen
  • 10vein
  • 6adipose tissue
  • 2eye
Project
  • 801AMP
Genome assembly (visualization)
  • 767GRCh38
  • 745hg19
Lab
  • 801AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 20inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
BIOSAMPLE
ASSAY

801 results

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Clear Filters
ChIP-seq
tissue
liver38
heart left ventricle28
body of pancreas26
tibial nerve24
kidney18
cell line
HepG2293
GM1287854
Panc16
primary cell
skeletal muscle myoblast14
endothelial cell of umbilical vein10
skeletal muscle satellite cell7
mesenchymal stem cell6
kidney epithelial cell4
in vitro differentiated cells
hepatocyte14
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