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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1390ChIP-seq
  • 1278total RNA-seq
  • 209DNase-seq
  • 136ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 5Hi-C
Assay category
  • 1390DNA binding
Target of assay
  • 869histone modification
  • 868histone
  • 496transcription factor
  • 440narrow histone mark
  • 427broad histone mark
  • 106RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 20control
  • 5other context
  • 5other post-translational modification
Date released
  • 334November, 2017
  • 176October, 2019
  • 171August, 2017
  • 123May, 2021
  • 97May, 2019
  • 72December, 2017
  • 65April, 2019
  • 63November, 2018
  • 45October, 2018
  • 40May, 2024
  • 32September, 2018
  • 30August, 2021
  • 30December, 2018
  • 27May, 2020
  • 23June, 2019
  • 21January, 2019
  • 16February, 2018
  • 11November, 2019
  • 6October, 2017
  • 5February, 2021
  • 3March, 2020
Available data
  • 1578bam
  • 1390bigWig
  • 1325bed narrowPeak
  • 857fastq
  • 801bigBed narrowPeak
  • 398tagAlign
  • 114bed broadPeak
  • 79bigBed broadPeak
  • 53bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 1384Homo sapiens
Biosample type
  • 615tissue
  • 411cell line
  • 247primary cell
  • 115in vitro differentiated cells
  • 2stem cell
Organ
  • 432liver
  • 172brain
  • 161pancreas
  • 114heart
  • 101epithelium
  • 79vasculature
  • 76blood vessel
  • 75connective tissue
  • 54blood
  • 54bodily fluid
  • 48limb
  • 39kidney
  • 27musculature of body
  • 25artery
  • 24nerve
  • 19adipose tissue
  • 14embryo
  • 12spleen
  • 12vein
  • 2eye
  • 1pituitary gland
Project
  • 1302AMP
  • 88T1D
Genome assembly (visualization)
  • 1294hg19
  • 1254GRCh38
Lab
  • 1219AMP-T2D consortium
  • 117Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 14Bing Ren, UCSD
Audit category:
  • 47inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 86missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
BIOSAMPLE
ASSAY

1390 results

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Clear Filters
ChIP-seq
tissue
liver82
left cardiac atrium40
heart left ventricle29
islet of Langerhans29
body of pancreas26
cell line
HepG2326
GM1287854
EndoC_BH113
Panc16
smooth muscle cell of the coronary artery4
primary cell
monocyte84
CD8-positive, alpha-beta T cell33
pancreatic endocrine cell23
skeletal muscle myoblast15
pancreatic ductal cell13
in vitro differentiated cells
adipocyte47
hepatocyte14
neural progenitor cell13
pancreatic endoderm12
definitive endodermal cell6
stem cell
hESC2
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