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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
total RNA-seq
150
ChIP-seq
75
single cell RNA-seq
56
ATAC-seq
10
WGBS
3
DNase-seq
2
FAIRE-seq
Assay category
150
DNA binding
Target of assay
101
histone
101
histone modification
52
broad histone mark
49
narrow histone mark
31
control
18
transcription factor
9
RNA binding protein
Date released
74
August, 2017
35
October, 2018
32
September, 2018
6
September, 2017
3
November, 2017
Available data
297
bam
237
bigWig
213
bed narrowPeak
150
fastq
128
bigBed narrowPeak
25
tagAlign
21
bed bed3+
16
bed broadPeak
4
bigBed broadPeak
Organism
143
Homo sapiens
Biosample type
77
tissue
73
primary cell
Organ
429
liver
147
pancreas
88
connective tissue
71
epithelium
50
blood
50
bodily fluid
37
adipose tissue
22
embryo
20
spleen
18
brain
6
vasculature
3
blood vessel
Project
150
AMP
Genome assembly (visualization)
122
hg19
121
GRCh38
Lab
150
AMP-T2D consortium
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
150 results
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ChIP-seq
tissue
body of pancreas
33
islet of Langerhans
28
pancreas
16
primary cell
pancreatic endocrine cell
23
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
pancreatic acinar cell
8
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