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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 857ChIP-seq
  • 237total RNA-seq
  • 134single cell RNA-seq
  • 61ATAC-seq
  • 27snATAC-seq
  • 17WGBS
  • 12DNase-seq
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 857DNA binding
Target of assay
  • 454transcription factor
  • 230histone modification
  • 229histone
  • 168control
  • 118broad histone mark
  • 110narrow histone mark
  • 89RNA binding protein
  • 82recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 324November, 2017
  • 181August, 2017
  • 94December, 2017
  • 70November, 2018
  • 58October, 2018
  • 34December, 2018
  • 32September, 2018
  • 25January, 2019
  • 24February, 2018
  • 9October, 2017
  • 6September, 2017
Available data
  • 1578bam
  • 1390bigWig
  • 1325bed narrowPeak
  • 857fastq
  • 801bigBed narrowPeak
  • 398tagAlign
  • 114bed broadPeak
  • 79bigBed broadPeak
  • 53bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 850Homo sapiens
Biosample type
  • 420cell line
  • 220tissue
  • 120in vitro differentiated cells
  • 94primary cell
  • 3stem cell
Organ
  • 452liver
  • 147pancreas
  • 90connective tissue
  • 72epithelium
  • 60blood
  • 60bodily fluid
  • 37adipose tissue
  • 22embryo
  • 20spleen
  • 18brain
  • 6vasculature
  • 3blood vessel
Project
  • 857AMP
Genome assembly (visualization)
  • 704hg19
  • 652GRCh38
Lab
  • 857AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 4inconsistent ontology term
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
BIOSAMPLE
ASSAY

857 results

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Clear Filters
ChIP-seq
cell line
HepG2360
GM1287860
tissue
liver67
body of pancreas33
islet of Langerhans28
spleen20
pancreas16
in vitro differentiated cells
adipocyte53
pancreatic endoderm18
hepatocyte15
definitive endodermal cell8
primitive gut cell8
primary cell
pancreatic endocrine cell23
skeletal muscle myoblast15
pancreatic alpha cell13
pancreatic beta cell13
pancreatic ductal cell13
stem cell
hESC3
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