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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1743ChIP-seq
  • 1518total RNA-seq
  • 531ATAC-seq
  • 369single cell RNA-seq
  • 211DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 18small RNA-seq
  • 17RRBS
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1743DNA binding
Target of assay
  • 970histone modification
  • 969histone
  • 491narrow histone mark
  • 477broad histone mark
  • 462transcription factor
  • 306control
  • 107RNA binding protein
  • 89recombinant protein
  • 31chromatin remodeller
  • 4other context
  • 4other post-translational modification
Date released
  • 347November, 2017
  • 258August, 2017
  • 242October, 2019
  • 165May, 2021
  • 120May, 2019
  • 91December, 2017
  • 80April, 2019
  • 74October, 2018
  • 68November, 2018
  • 50May, 2020
  • 43August, 2021
  • 40May, 2024
  • 34December, 2018
  • 32September, 2018
  • 31June, 2019
  • 24January, 2019
  • 14October, 2017
  • 13November, 2019
  • 8February, 2021
  • 6September, 2017
  • 3March, 2020
Available data
  • 1451bam
  • 1287bigWig
  • 1232bed narrowPeak
  • 738bigBed narrowPeak
  • 729fastq
  • 382tagAlign
  • 62bed broadPeak
  • 50bed bed3+
  • 27bigBed broadPeak
  • 3tar
  • 1tagAlign bed3+
Organism
  • 1736Homo sapiens
Biosample type
  • 900tissue
  • 422cell line
  • 244primary cell
  • 174in vitro differentiated cells
  • 3stem cell
Organ
  • 488liver
  • 217brain
  • 189pancreas
  • 153connective tissue
  • 134heart
  • 103epithelium
  • 102vasculature
  • 99blood vessel
  • 73adipose tissue
  • 66limb
  • 59blood
  • 59bodily fluid
  • 52kidney
  • 39musculature of body
  • 35nerve
  • 34artery
  • 20spleen
  • 17vein
  • 13embryo
  • 5eye
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 1655AMP
  • 88T1D
Genome assembly (visualization)
  • 1202hg19
  • 1178GRCh38
Lab
  • 1531AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 18Bing Ren, UCSD
Audit category:
  • 59inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 86missing controlled_by
Audit category:
  • 42inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.platform.term_name!
  • Illumina Genome Analyzer IIx
BIOSAMPLE
ASSAY

1743 results

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Clear Filters
ChIP-seq
tissue
liver142
islet of Langerhans68
left cardiac atrium40
subcutaneous abdominal adipose tissue36
body of pancreas35
cell line
HepG2317
GM1287859
EndoC_BH115
Panc113
smooth muscle cell of the coronary artery6
primary cell
monocyte85
CD8-positive, alpha-beta T cell33
pancreatic endocrine cell23
endothelial cell of umbilical vein17
pancreatic ductal cell13
in vitro differentiated cells
adipocyte67
embryonic stem cell37
neural progenitor cell21
hepatocyte15
pancreatic endoderm9
stem cell
hESC3
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